Software Helps Gene Editing Tool CRISPR Live Up to Its Hype

New algorithms make CRISPR as easy as point-and-click

5 min read
Software Helps Gene Editing Tool CRISPR Live Up to Its Hype
Illustration: Emily Cooper

Biotechnologists are jumping at the chance to use the revolutionary gene-editing tool known as CRISPR. The molecular gadget can be programmed to accurately tweak the DNA of any organism, but scientists need software algorithms to hasten the programming process. Dozens of teams are developing such software, and each faces the task of keeping up with rapidly evolving science and an increasingly crowded field.

CRISPR—short for Clustered, Regularly Interspaced, Short Palindromic Repeats—is a genetic phenomenon found in microbes that scientists adapted to disable a gene or add DNA at precise locations in the genetic code. CRISPR isn’t the first gene-editing tool on the block, but it is by far the simplest and cheapest, and since its adaptation four years ago, it has proliferated globally. Researchers can use it to knock out genes in animal models to study their function, give crops new agronomic traits, synthesize microbes that produce drugs, create gene therapies to treat disease, and potentially—after some serious ethical debate—to genetically correct heritable diseases in human embryos.

Keep Reading ↓ Show less

Stay ahead of the latest trends in technology. Become an IEEE member.

This article is for IEEE members only. Join the world’s largest professional organization devoted to engineering and applied sciences and get access to all of Spectrum’s articles, podcasts, and special reports. Learn more →

Membership includes:

  • Get unlimited access to IEEE Spectrum content
  • Follow your favorite topics to create a personalized feed of IEEE Spectrum content
  • Save Spectrum articles to read later
  • Network with other technology professionals
  • Establish a professional profile
  • Create a group to share and collaborate on projects
  • Discover IEEE events and activities
  • Join and participate in discussions

This CAD Program Can Design New Organisms

Genetic engineers have a powerful new tool to write and edit DNA code

11 min read
A photo showing machinery in a lab

Foundries such as the Edinburgh Genome Foundry assemble fragments of synthetic DNA and send them to labs for testing in cells.

Edinburgh Genome Foundry, University of Edinburgh

In the next decade, medical science may finally advance cures for some of the most complex diseases that plague humanity. Many diseases are caused by mutations in the human genome, which can either be inherited from our parents (such as in cystic fibrosis), or acquired during life, such as most types of cancer. For some of these conditions, medical researchers have identified the exact mutations that lead to disease; but in many more, they're still seeking answers. And without understanding the cause of a problem, it's pretty tough to find a cure.

We believe that a key enabling technology in this quest is a computer-aided design (CAD) program for genome editing, which our organization is launching this week at the Genome Project-write (GP-write) conference.

With this CAD program, medical researchers will be able to quickly design hundreds of different genomes with any combination of mutations and send the genetic code to a company that manufactures strings of DNA. Those fragments of synthesized DNA can then be sent to a foundry for assembly, and finally to a lab where the designed genomes can be tested in cells. Based on how the cells grow, researchers can use the CAD program to iterate with a new batch of redesigned genomes, sharing data for collaborative efforts. Enabling fast redesign of thousands of variants can only be achieved through automation; at that scale, researchers just might identify the combinations of mutations that are causing genetic diseases. This is the first critical R&D step toward finding cures.

Keep Reading ↓ Show less