IMAGE: JORDAN HOLLENDER, MODEL COURTESY OF
INDIGO® INSTRUMENTS
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In our genes: Ajay Royyuru traces the history of human
migration through DNA data.
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Where did we come from? How did we get here? The
Genographic Project—a joint effort of the National
Geographic Society, in Washington, D.C., and IBM
Corp.—aims to answer those big questions once and for
all. Using genetic data from thousands of people around
the world, it plans to construct a map of human
migration, spanning millennia from our origins in Africa
to the present.
If this is anthropology's moon shot—as some say it
is—then its chief rocket scientist is Ajay Royyuru,
senior manager of the Computational Biology Center at
IBM's Thomas J. Watson Research Center, Yorktown
Heights, N.Y. "We get to pursue an innovation that will
hopefully touch every individual on the planet," Royyuru
says of the project. "You don't get to do that all the
time."
The Genographic Project, which began in April 2005
and is scheduled to run for five years, aims to collect
DNA and anthropological data—such as languages
spoken—from thousands of volunteers, including more
than 100 000 of the world's remaining indigenous people.
It will then study the mutations, called markers, in
certain stretches of their DNA to infer ancestry.
For example, a mutation going by the ungainly name of
"mitochondrial haplogroup D" first happened about 25 000
years ago in Central Asia and is one of five mutations
found in all Native American DNA. But it's also common
in the DNA of indigenous people in northeast Asia,
evidence that the first Americans arrived by migrating
from that part of Asia across the Bering Strait.
The project's scientists already know of dozens of
markers and hope to find many more. That still leaves
the hard problem of figuring out where and when they
occurred—in other words, uncovering who our common
ancestors were. It's a job well suited to clever
algorithms and complex computation, perfect for the mix
of biologists and computer scientists Royyuru leads.
Royyuru is curious and enthusiastic, but also
exacting. In a single afternoon's conversation, he
mentions the importance of doing the computational work
of the Genographic Project correctly no fewer than three
times.
Although a molecular biologist by training, he has
been doing computer science his whole career, starting
with his Ph.D. at the Tata Institute of Fundamental
Research, in Mumbai, hundreds of kilometers west of his
central Indian hometown of Bhilai. In a way, Royyuru,
41, was born at the right time. Computational
biology—the use of information technology to solve
biological problems—came of age as a discipline just as
he did himself, during his college and graduate school
years. As the volume of gene sequences, molecular
structures, and other biological data ballooned,
computers began to take a starring role in making sense
of it all. "I was lucky to be there from the time it
began happening," he says.
By the time he left the Tata Institute, his research
was done almost completely in front of a computer
instead of at a lab bench. He went from Mumbai to a
postdoctoral research spot in New York City at Memorial
Sloan-Kettering Cancer Center, where he developed
computational tricks to reveal the three-dimensional
structure of a bovine version of HIV. "Most of my
research was taking the data, analyzing it, and
breathing meaning into it."
Having spent so much time solving biology's problems
with computers, developing software to help other
scientists do the same seemed like a natural next step.
He moved to San Diego for a position at Accelrys
Software Inc., a maker of molecular modeling programs,
but found disappointment. "That's where I realized that
research was my true calling, not software," he says.
Developing software so other people could answer the big
questions wasn't for him. He wanted to get back to
answering them himself.
When Royyuru came back to the New York City area to
join IBM's life sciences research division in 1998, it
consisted of only a few people. But as the idea grew
that life sciences could showcase the cutting edge of
computing technology, so did the number of researchers.
Today he runs the computational biology section just
like an academic laboratory, with a focus on publishable
research results, open debate, and occasional argument.
His team of 35 scientists and engineers works on a host
of research problems besides the Genographic Project,
and he's in charge of choosing which problems his lab
should tackle next. "What's really fun is seeing what
the future is," he says in a conspiratorial tone. "The
role of the strategist is what I enjoy the most."
It's a big challenge for him to pinpoint which
biological questions deserve IBM's computational might.
"The opportunities are immense, and yet you can't do all
of it at once," he says. He looks for projects that not
only are exciting and scientifically valuable but also
give his researchers and IBM the expertise to tackle
other worthy—and potentially profitable—problems.
The Genographic Project is a case in point. Even
though those thousands of volunteers have offered no
personal medical information, the algorithms Royyuru is
developing to sift through their genetic and cultural
data will be useful in extracting meaning from
electronic medical records. The ability to interpret
such data is key to the promise of personalized
medicine, in which therapies can be tailored to a
person's genetic peculiarities—avoiding unpleasant side
effects and potentially deadly mistakes.
While it's part of his job to find such tangible
value for IBM, Royyuru's motivations are far from
mercenary. "We get to do something that will make a
difference for the vast majority of the planet," he
says.
Ajay Royyuru (M)
Age: 41.
What he does:
Manages a computational biology lab and runs the
computing research for the Genographic Project, a
five-year effort to map human migration, from its
origins to the present, using clues in human DNA.
For whom: IBM
Corp.
Where he does
it: IBM's Thomas J. Watson Research Center,
in Yorktown Heights, N.Y.
Fun factor:
His computational algorithms could tell us where we all
came from and how we got here.